The couple, who got engaged on Valentine's Day in 2009, were married in Santa Fe, N.M., where the Star Wars actor is filming Cowboys and Aliens.
The 67-year-old actor and Flockhart, 45, met at the 2002 Golden Globes. This is the first marriage for the Brothers & Sisters star, who adopted her 9-year-old son Liam in 2001, and the third marriage for Ford. He has four children.
Reps for the actors could not immediately be reached for comment.