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13 Episodes 2002 - 2003
Episode 1
Sat, Sep 14, 200222 mins
The remaining X-Men and Brotherhood members deal with the aftermath of the exposure of mutants and go to Area 51 to save their captive members. However, when Cyclops traps the treacherous Mystique in Area 51 to blackmail her into saying where Professor X is, the squads split. The X-Men are now alone in a world which shuns them.

Episode 2
Sat, Sep 21, 200222 mins
While Storm and Beast step in front of the Senate to try curbing the rampant anti-mutant crowd, the rest of the X-Men have to stop Juggernaut, who has been unleashed by Mystique and is threatening to destroy a dam.

Episode 3
Sat, Sep 28, 200222 mins
The X-Men have rescued Professor X, and are back home. However, despite their very public efforts to defeat Juggernaut and prevent the destruction of the town threatened by his attack, bigotry towards mutants still exists as our heroes return to Bayville High. Now they are scorned and verbally abused by their human classmates; including their mutant-hating Edward Kelly. Also, the School Board decides whether or not to allow mutants to attend school. But Kelly enlists Duncan to team up with Avalanche, Toad and Blob to ensure a permanent mutant ban.

Episode 4
Sat, Oct 5, 200222 mins
The Scarlet Witch wants to find out where her father Magneto is, so she enlists Caliban for help. She then goes to her brother Quicksilver for information. When he refuses, Wanda delivers him to the police. When the Brotherhood tries to break him out of a prison transport (as part of Magneto's offer from Gambit), Rogue and Shadowcat appear to break up their rescue operation.

Episode 5
Sat, Oct 19, 200222 mins
When Jean Grey's about to confess her strong and deep, mutual romantic love to Cyclops, Mystique (who managed to escape from Area 51 and is out for revenge) abducts Cyclops and abandons him in the desert in Mexico without his ruby quartz glasses. Jean; who has vivid telepathic visions of him in peril, tracks him down, but Mystique is determined to kill both of them.

Episode 6
Sat, Nov 2, 200222 mins
Spyke joins a skateboarding contest sponsored by "Pow-R 8" soda. However, Pow-R 8 is harmful to mutants, and when Spyke drinks a swig, his mutation greatly advances, poisons, and disfigures him seriously. He is saved by the Morlocks, and in the end, Spyke joins them.

Episode 7
Sat, Nov 9, 200222 mins
The Scarlet Witch finally tracks down Magneto to his Acolyte headquarters in a nearby ski resort. Meanwhile, Kurt is spending time with Amanda Sefton and meeting her parents. In a bid to win the Scarlet Witch's affections, Toad steals Nightcrawler's Image Inducer (thereby blowing his cover in front of the Sefton household) and pursues Wanda, followed by an angry Kurt. However, when Scarlet Witch gets abducted by Magneto and is brainwashed by Mastermind into believing her father was a kind and giving man (erasing her memory of the asylum she was sent to), the two team up to rescue her.

Episode 8
Sat, Nov 16, 200221 mins
Rogue witnesses her infatuated crush, Cyclops, date Jean Grey. She's consoled by her British friend, Risty, but when she accidentally touches and absorbs everything from her at a concert, Rogue finds out that Risty was really Mystique all along in disguise. Absorbing Mystique's power, Rogue's alter-egos from inside that she has absorbed in the past, use the shape-shifting ability she accidentally borrowed from Mystique to break free from Rogue's inner self, fighting to take control over her body and mind. Thinking that everybody hates her, Rogue's latent multiple personality disorder breaks through and she loses her sanity. The X-Men have to stop their friend and colleague, who has all of their mutant abilities combined and in the verge of burning herself out.

Episode 9
Sat, Nov 30, 200222 mins
Angel spots Gambit stealing a mysterious artifact, but when he tries to stop him, Mesmero fights him off. When the Acolytes want to steal another artifact, the X-Men fight them and discover there is a bigger plan happening. Soon both teams will face a spider-like being which is virtually unstoppable.

Episode 10
Sat, Aug 2, 200322 mins
A mysterious female assassin breaks into a S.H.I.E.L.D.. facility, finding and downloading files pertaining to the X-Men but searches for one in particular: Wolverine. After she leaves the facility, she attacks the X-Mansion, knocking out the X-Men one by one. Wolverine finds out that the assassin is his clone, designation "X-23", created by the Dr. Deborah Risman and raised without love to be a living weapon exploited by HYDRA, and that she wants to kill him because she holds him responsible for her miserable existence. Wolverine and X-23 square off in a battle that Wolverine does not want to win.

Episode 11
Sat, Aug 9, 200322 mins
Rogue falls under the mind control of Mesmero and is used as a weapon to absorb the mutant abilities of every X-Man, Brotherhood, and Acolyte member. The three factions reluctantly cooperate and find out that Mesmero wants Rogue to give all of her stolen abilities to Apocalypse to awaken him.

Episode 12
Sat, Aug 16, 200322 mins
The X-Men, Brotherhood, and Acolytes continue their battle against Mesmero. The heroes and villains track down Apocalypse to Egypt, but only to come face-to-face with him and having failed to prevent Apocalypse from coming back to life. Mankind is now in terrible danger of the world's first mutant.

Episode 13
Sat, Aug 23, 200322 mins
Taking a break from superhero duty, the X-Men take a pleasure cruise. However, Magma becomes violently ill, literally suffering from earth withdrawal. When Boom Boom and Iceman take her to an island, she accidentally triggers a volcano. When the volcano threatens to explode again, Magma dives into its heart to silence it once and for all.
